Modular, Scalable Phenomic Data Processing Pipelines
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Updated
Jun 1, 2026 - Python
Modular, Scalable Phenomic Data Processing Pipelines
Performs DNA sequence alignment of Anopheles Gambiae (common mosquito). Speeds up execution time by a factor of ~200 by distributing computation via the HTCondor and Work Queue systems. Utilizes swaligntool to compute scores of DNA comparisons.
A hands-on RabbitMQ project demonstrating a distributed task queue system. Explore message queuing, durability, and distributed processing with simple Python scripts. Ideal for learning asynchronous communication and RabbitMQ basics.
Workqueue strategy simulator for AR follow-up. Paired-randomness experiments compare FIFO vs value-ranked working at identical staffing, with timely-filing write-offs pricing the ordering decision. Value-aware ordering beat FIFO by 15% in simulation. Python.
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