Automatic descriptor selection and volcano curve generation
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May 9, 2023 - Python
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volcano-plot
Here are 14 public repositories matching this topic...
Interactive Transcriptomics & DEG Visualization Dashboard
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Aug 4, 2026 - Python
Transparent statistical pipeline for identifying biomarkers associated with neurological disease progression. Spearman correlations, Mann-Whitney group comparisons, volcano plots, and FDR correction.
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Jun 5, 2026 - Python
AI agent: from the published literature to magma-compressibility and surface-deformation reports for any volcano
insar volcanology magma ai-agents volcanic volcano volcano-plot volcano-model volcano-monitoring volcano-engine
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Oct 6, 2026 - Python
🧬 CNI is a Python toolkit for analyzing and visualizing RNA-seq data with a focus on cellular networks and pathway analysis. Create volcano plots, heatmaps, PCA plots, and more from Excel datasets. 🔍📊🐍
python bioinformatics rna-seq genomics heatmap plotly pandas data-visualization seaborn networkx statistical-analysis pca matplotlib cluster-analysis pathway-analysis volcano-plot cellular-networks excel-data
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May 30, 2025 - Python
A multi-omics analysis framework for cancer survival prediction (KIRC/LUSC). Utilizes LASSO feature selection, Cox Regression, and Volcano plots to identify genomic biomarkers and predict patient outcomes from TCGA data.
bioinformatics genomics tcga biostatistics survival-analysis cancer-research lasso-regression multi-omics volcano-plot
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Dec 31, 2025 - Python
Streamlit-based web application for scientific data cleaning, basic statistics, and interactive data visualization. Designed for researchers, students, and small labs to easily upload .csv or .tsv files, clean data, generate plots, and download results — all without writing code.
python machine-learning bioinformatics exploratory-data-analysis computational-biology gene-expression data-visualization seaborn pca data-analysis matplotlib cloud-application volcano-plot report-generation streamlit interactive-tool scientific-application
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May 20, 2025 - Python
Command-line bioinformatics tools: clean messy RNA-seq count spreadsheets, fetch PubMed abstracts and create publication-ready volcano plots (Python, pandas, Biopython, seaborn).
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Oct 5, 2026 - Python
Bioinformatics tasks: DNA-protein translation, Hamming distance, and six visualizations for gene expression & breast cancer data using Pandas, Seaborn, Matplotlib.
python gene-expression breast-cancer-wisconsin hamming-distance literature-review pandas-python scatterplot-visualization density-plot matplotlib-python volcano-plot heatmap-visualization seaborn-python correlation-heatmap
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Nov 16, 2025 - Python
Publication-quality bioinformatics figures for RNA-seq: volcano, enrichment bubble, clustered heatmap. Nature/Cell/CN-core presets, CJK fonts, auto-generated Methods paragraphs.
python bioinformatics rna-seq heatmap data-visualization matplotlib differential-expression enrichment-analysis bioinformatics-visualization volcano-plot scientific-figures publication-quality
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Sep 8, 2026 - Python
Differential-expression volcano plot toolkit highlighting significant up- and down-regulated genes.
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Jun 19, 2026 - Python
Agent skill and CLI toolkit for querying, analyzing, and visualizing human RNA expression baselines and cis-eQTL regulatory associations from the GTEx Portal API V2 across 54 tissues into standalone interactive HTML dashboards.
python bioinformatics rna-seq genomics computational-biology gene-expression data-visualization scientific-visualization gtex transcriptomics uberon eqtl gencode cli-tool volcano-plot ai-agent interactive-dashboard tissue-specificity agent-skill human-tissues
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Sep 23, 2026 - Python
Differential Expression Analysis Pipeline for TCGA data (Python + PyDESeq2) with publication-quality plots.
gui bioinformatics rna-seq heatmap tcga gene-expression data-visualization deseq2 transcriptomics differential-gene-expression python-gui volcano-plot pydeseq2 gdc-data
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Jul 30, 2026 - Python
RNA-Seq differential expression pipeline with validation, FastAPI REST API, and interactive volcano plot dashboard
python bioinformatics rna-seq genomics geo data-visualization differential-expression fastapi volcano-plot
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May 22, 2026 - Python
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