sequences

A set of tools to visualize and interact with sequences of 3D data.

Code for the model presented in the paper: "code2seq: Generating Sequences from Structured Representations of Code"

An open-source library for Python 3 providing tools for analysis and simulation of analog and digital communication systems.

Analysis scripts for log data sets used in anomaly detection.

Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

Use Postgres' generate_series to create sequences with Django's ORM

AbLang: A language model for antibodies

Needleman-Wunsch Algorithm for global alignment and local alignment

A blender add-on for VSE

Explore related sequences in the OEIS

LinkML schema for GFF3, the Genome Feature Format

Object-oriented continued fractions with Python.

A Python 3 library to access the OEIS (Online Encyclopedia of Integer Sequences).

Motif discovery for DNA sequences using multiobjective optimization and genetic programming.

Time series & sequence processing in Python 🗠

seq2cause: Turns any discrete sequence of events into a causal graph using autoregressive models (LLaMA, GPT, RNN, Mamba).

A basic API wrapper for OEIS.

interface to the OEIS

General-purpose matrices for the layman