phenotypes

API for linked biological knowledge

ProCyon: A multimodal foundation model for protein phenotypes

Learn interpretable computational phenotyping models from k-merized genomic data

Flexible analysis of high-content CRISPR screening

ComptoxAI - An artificial Intelligence toolkit for computational toxicology

A Silver Standard Corpus of Human Phenotype-Gene Relations

EXPERIMENTAL rendering of phenopackets in linkml

phenofhy is a Python package for phenotype analysis in the Our Future Health trusted research environment

Django app for parsing/loading Phenotype ontologies (HPO, MONDO, OncoTree, etc)

A Bio2BEL package for the Medical Subject Headings (MeSH; https://meshb.nlm.nih.gov)

https://github.com/zietzm/phenotype_standardization/wiki

Phenotype2Phenopacket is a command-line tool that converts a phenotype annotation into GA4GH Phenopackets, facilitating standardised phenotypic data representation.

A Bio2BEL package for mir2disease (http://www.mir2disease.org)

PhenoQC is a lightweight, efficient, and user-friendly toolkit designed to perform comprehensive quality control (QC) on phenotypic datasets. It ensures that data adheres to standardized formats, maintains consistency, and is harmonized with recognized ontologies.

Open clinical phenotype definitions (ICD/CPT/RxNorm/LOINC) for EHR research cohorts

Analyse des phénotypes dans les réseaux de régulation génétique: étude de cas du métabolisme énergétique dans le cancer du pancréas.

A Bio2BEL package for converting the Human Phenotype Ontology (HP) to BEL

AI-powered rare disease diagnosis engine that maps your symptoms to diseases and genes using knowledge graphs and machine learning — because 7 years is too long to wait for an answer.