Tool for generating influenza A virus genome sequences from FASTQ data
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Jul 22, 2024 - Python
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consensus-sequence
Here are 5 public repositories matching this topic...
This is a manual for viral amplicon data analysis of Nanopore long reads
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May 4, 2026 - Python
A python pipeline that brings together tools for generation of consensus sequence, multiple sequence alignment, and phylogenetic analysis.
mrbayes multiple-sequence-alignment phylogenetic-analysis fasttree consensus-sequence sequence-cleaner
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Mar 15, 2024 - Python
A Python project for multiple sequence alignment (MSA) post-processing: consensus sequence calculation, PSSM/profile generation with sequence-logo visualization, plus a small Markov chain simulator.
markov-chain computational-biology biopython pssm multiple-sequence-alignment sequence-logo logomaker consensus-sequence
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Dec 30, 2025 - Python
Portable, reproducible pipeline for Nanopore amplicon demultiplexing, reference assignment, per-clone consensus and QC. Whole-vector references and pooled colony-PCR deconvolution.
nanopore bioinformatics-pipeline protein-design demultiplexing amplicon-sequencing consensus-sequence plasmid-sequencing
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Sep 9, 2026 - Python
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